Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CMS1558Putative substrate-binding transport protein. (551 aa)    
Predicted Functional Partners:
CMS1560
Putative integral membrane transport protein.
 
 
 0.926
CMS1559
Putative integral membrane transport protein.
 
 
 0.924
CMS2884
Putative integral membrane transport protein.
 
 
 0.887
CMS1561
Putative ABC transporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 
 0.773
CMS1562
Putative ABC transporter ATP-binding subunit.
 
 
 0.622
CMS2883
Putative substrate-binding transport lipoprotein.
  
  
  0.492
CMS1531
Putative ABC transporter ATP-binding subunit.
  
 0.476
CMS2727
Putative substrate-binding transport lipoprotein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
  
  
 0.464
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.451
CMS0060
Oligopeptide transport system integral membrane protein.
  
 
 0.413
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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