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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS1573Putative substrate-binding transport protein. (336 aa)    
Predicted Functional Partners:
CMS1571
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.971
CMS1572
Putative ATP-binding ABC transport protein.
 
 
 0.970
CMS0929
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.892
CMS0930
Fe uptake system permease.
 
 
 0.881
CMS1574
Putative integral membrane transport protein.
  
    0.774
CMS3065
Putative iron-siderophore uptake system transmembrane component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.737
CMS0337
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.728
CMS1570
Hypothetical protein; Similar to upstream CDS, some similarity to C-terminal portion of other hypotheticals.
 
     0.634
CMS0335
Putative ABC-transport protein, ATP-binding component.
 
 
 0.630
CMS1569
Hypothetical protein; Similar to downstream CDS, some similarity to C-terminal portion of other hypotheticals.
 
     0.607
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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