STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS1573Putative substrate-binding transport protein. (336 aa)    
Predicted Functional Partners:
CMS1572
Putative ATP-binding ABC transport protein.
 
 
 0.964
CMS1571
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.963
CMS0929
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.861
CMS0930
Fe uptake system permease.
 
 
 0.859
CMS1574
Putative integral membrane transport protein.
       0.773
CMS3065
Putative iron-siderophore uptake system transmembrane component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.677
CMS0337
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.651
CMS1570
Hypothetical protein; Similar to upstream CDS, some similarity to C-terminal portion of other hypotheticals.
 
     0.629
CMS1569
Hypothetical protein; Similar to downstream CDS, some similarity to C-terminal portion of other hypotheticals.
 
     0.602
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.577
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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