STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS1590Putative initial glycosyl transferase; Responsible for linkage of the initial sugar to the lipid carrier in surface polysaccharide biosynthesis. (529 aa)    
Predicted Functional Partners:
CMS2399
Putative surface polysaccharide biosynthesis protein.
 
  
 0.989
CMS2256
Putative polysaccharide biosynthesis protein.
 
  
 0.988
CMS0167
Putative Wzz-related membrane protein.
 
  
 0.987
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.955
wzx
Putative surface polysaccharide flippase.
  
  
 0.887
manC
Mannose-1-phosphate guanylyltransferase.
  
  
 0.812
CMS0642A
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to upstream CDS.
  
  
 0.780
CMS0642B
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to downstream CDS.
  
  
 0.780
CMS2389
Putative surface polysaccharide transport protein.
  
  
 0.768
CMS0080
Putative glycosyl transferase.
 
  
0.741
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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