STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS1632Conserved hypothetical protein; Homologues in Mycobacteriophage. (75 aa)    
Predicted Functional Partners:
gyrB
Putative DNA gyrase subunit B.
 
     0.697
CMS1648
Conserved hypothetical protein.
  
     0.661
CMS1641
Conserved hypothetical protein.
  
     0.560
CMS1948
Putative DNA helicase.
  
     0.560
CMS1219
Conserved hypothetical protein.
  
     0.545
CMS1341
Putative LacI-family transcriptional regulator (pseudogene); Appear to be truncated at 5'.
  
     0.506
CMS2104
Conserved hypothetical protein.
  
     0.469
CMS1673
Putative exported ATP-binding protein.
  
     0.453
CMS0009
Putative integral membrane protein.
  
     0.432
celB
Cellulase (pseudogene); HMMPfam hit to PF00553, Cellulose-binding,bacterial type, score 5.5e-06; Belongs to the methyltransferase superfamily.
  
     0.426
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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