Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CMS1647 | CMS1678 | CMS1647 | CMS1678 | Putative ribonuclease; N-terminal extension relative to homologues predicted by Frameplot. | Putative helicase. | 0.582 |
CMS1647 | rbpA | CMS1647 | CMS1680 | Putative ribonuclease; N-terminal extension relative to homologues predicted by Frameplot. | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.434 |
CMS1647 | secG | CMS1647 | CMS1985 | Putative ribonuclease; N-terminal extension relative to homologues predicted by Frameplot. | Protein-export membrane protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.655 |
CMS1672 | CMS1678 | CMS1672 | CMS1678 | Putative methyltransferase. | Putative helicase. | 0.526 |
CMS1672 | lnt | CMS1672 | CMS1679 | Putative methyltransferase. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.483 |
CMS1672 | tatA | CMS1672 | CMS1676 | Putative methyltransferase. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.469 |
CMS1672 | tatC | CMS1672 | CMS1677 | Putative methyltransferase. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.496 |
CMS1672 | whiB | CMS1672 | CMS0646 | Putative methyltransferase. | Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.461 |
CMS1672 | whiB-2 | CMS1672 | CMS0679 | Putative methyltransferase. | Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.423 |
CMS1678 | CMS1647 | CMS1678 | CMS1647 | Putative helicase. | Putative ribonuclease; N-terminal extension relative to homologues predicted by Frameplot. | 0.582 |
CMS1678 | CMS1672 | CMS1678 | CMS1672 | Putative helicase. | Putative methyltransferase. | 0.526 |
CMS1678 | CMS2211 | CMS1678 | CMS2211 | Putative helicase. | Putative GTP-binding elongation factor. | 0.599 |
CMS1678 | lnt | CMS1678 | CMS1679 | Putative helicase. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.832 |
CMS1678 | rbpA | CMS1678 | CMS1680 | Putative helicase. | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.509 |
CMS1678 | secG | CMS1678 | CMS1985 | Putative helicase. | Protein-export membrane protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.569 |
CMS1678 | tatA | CMS1678 | CMS1676 | Putative helicase. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.571 |
CMS1678 | tatC | CMS1678 | CMS1677 | Putative helicase. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.656 |
CMS1678 | whiB | CMS1678 | CMS0646 | Putative helicase. | Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.473 |
CMS1678 | whiB-2 | CMS1678 | CMS0679 | Putative helicase. | Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.565 |
CMS2211 | CMS1678 | CMS2211 | CMS1678 | Putative GTP-binding elongation factor. | Putative helicase. | 0.599 |
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