STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CMS1691Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family. (548 aa)    
Predicted Functional Partners:
peh
Endo-polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 
 0.916
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.887
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
  
 
 0.867
xyoA
Xylitol oxidase.
   
 
  0.807
CMS1705
Putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.727
CMS0960
Putative secreted glycosyl hydrolase (pseudogene); Limit of DNA match with upstream gene.
  
  
 0.527
CMS1692
Putative substrate-binding transport.
  
    0.509
CMS2234
Putative secreted pectate lyase.
  
   
 0.479
CMS0057
Conserved hypothetical protein.
 
   
 0.430
abfA-2
Conserved hypothetical protein (pseudogene); F.
 
  
 0.410
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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