STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS1701Putative glycosyl hydrolase (pseudogene); HMMPfam hit to PF00232, Glycoside hydrolase, family 1, score 6.2e-32. (754 aa)    
Predicted Functional Partners:
CMS0659
Putative integral membrane protein (pseudogene); 4 probable transmembrane helices predicted for CMS0658 by TMHMM2.0 at aa 57-79, 106-128, 149-171 and 181-203.
  
  
 
0.917
CMS2611
Alpha-glucosidase.
   
 
 0.909
CMS0142
Putative beta-glucosidase.
    
 0.905
CMS2438
Putative glycoside hydrolase; Belongs to the glycosyl hydrolase 1 family.
    
 0.905
CMS0917
Putative glucosidase.
     
 0.900
CMS0938
Hypothetical protein.
   
 
  0.900
CMS2823
Sugar hydrolase; Belongs to the glycosyl hydrolase 68 family.
   
 
  0.900
CMS1702
Putative integral membrane transport protein.
 
     0.590
CMS1703
Putative glycosyl hydrolase.
 
    
0.582
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.