STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CMS1775Putative integral membrane transport protein. (232 aa)    
Predicted Functional Partners:
CMS1776
Putative ABC transporter ATP-binding subunit.
 
 0.996
CMS1774A
Putative secreted substrate-binding transport protein.
 
 
 0.994
CMS1662
Putative ABC transporter ATP-binding protein.
 
 0.985
CMS1660
Putative substrate binding transport protein.
 
 0.975
CMS1774B
Putative integral membrane transport protein.
 
  
0.949
CMS1774
Hypothetical protein.
       0.548
CMS1777
Conserved hypothetical protein; Belongs to the SOS response-associated peptidase family.
       0.505
CMS1772
Putative oxygenase.
       0.489
CMS1772A
Conserved hypothetical protein.
       0.489
CMS1773
Putative chalcone synthase.
       0.489
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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