Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CMS1931 | CMS1932 | CMS1931 | CMS1932 | Putative insertion element IS1121 transposase; Nu/R. | Putative aldolase. | 0.533 |
| CMS1932 | CMS1931 | CMS1932 | CMS1931 | Putative aldolase. | Putative insertion element IS1121 transposase; Nu/R. | 0.533 |
| CMS1932 | CMS2433 | CMS1932 | CMS2433 | Putative aldolase. | Putative amino acid dehydratase. | 0.942 |
| CMS1932 | CMS2898 | CMS1932 | CMS2898 | Putative aldolase. | Conserved hypothetical protein. | 0.762 |
| CMS1932 | CMS2899 | CMS1932 | CMS2899 | Putative aldolase. | Putative oxidoreductase. | 0.439 |
| CMS1932 | gcvP | CMS1932 | CMS2222 | Putative aldolase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.955 |
| CMS1932 | glyA | CMS1932 | CMS0586 | Putative aldolase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.925 |
| CMS1932 | thrC | CMS1932 | CMS1478 | Putative aldolase. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.940 |
| CMS2433 | CMS1932 | CMS2433 | CMS1932 | Putative amino acid dehydratase. | Putative aldolase. | 0.942 |
| CMS2433 | gcvP | CMS2433 | CMS2222 | Putative amino acid dehydratase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.476 |
| CMS2433 | glyA | CMS2433 | CMS0586 | Putative amino acid dehydratase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.955 |
| CMS2433 | thrC | CMS2433 | CMS1478 | Putative amino acid dehydratase. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.957 |
| CMS2898 | CMS1932 | CMS2898 | CMS1932 | Conserved hypothetical protein. | Putative aldolase. | 0.762 |
| CMS2898 | CMS2899 | CMS2898 | CMS2899 | Conserved hypothetical protein. | Putative oxidoreductase. | 0.946 |
| CMS2899 | CMS1932 | CMS2899 | CMS1932 | Putative oxidoreductase. | Putative aldolase. | 0.439 |
| CMS2899 | CMS2898 | CMS2899 | CMS2898 | Putative oxidoreductase. | Conserved hypothetical protein. | 0.946 |
| gcvP | CMS1932 | CMS2222 | CMS1932 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative aldolase. | 0.955 |
| gcvP | CMS2433 | CMS2222 | CMS2433 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Putative amino acid dehydratase. | 0.476 |
| gcvP | glyA | CMS2222 | CMS0586 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.997 |
| gcvP | thrC | CMS2222 | CMS1478 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.432 |
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