CMS1970 protein (Clavibacter michiganensis sepedonicus)

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CMS1970

Putative ABC transporter ATP binding protein. (532 aa)

Predicted Functional Partners:

rplC

0.673

rpsI

0.670

rpsE

0.663

rplU

0.652

rpsC

0.651

rplD

0.649

rpsO

0.640

rpmD

0.637

rplT

0.633

rpmH

0.631

Your Current Organism:

Clavibacter michiganensis sepedonicus

NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMS1970	rplC	CMS1970	CMS0283	Putative ABC transporter ATP binding protein.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.673
CMS1970	rplD	CMS1970	CMS0284	Putative ABC transporter ATP binding protein.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.649
CMS1970	rplT	CMS1970	CMS1223	Putative ABC transporter ATP binding protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.633
CMS1970	rplU	CMS1970	CMS1816	Putative ABC transporter ATP binding protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.652
CMS1970	rpmD	CMS1970	CMS0300	Putative ABC transporter ATP binding protein.	50S ribosomal protein L30.	0.637
CMS1970	rpmH	CMS1970	CMS3115	Putative ABC transporter ATP binding protein.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.631
CMS1970	rpsC	CMS1970	CMS0289	Putative ABC transporter ATP binding protein.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.651
CMS1970	rpsE	CMS1970	CMS0299	Putative ABC transporter ATP binding protein.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.663
CMS1970	rpsI	CMS1970	CMS0321	Putative ABC transporter ATP binding protein.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.670
CMS1970	rpsO	CMS1970	CMS1185	Putative ABC transporter ATP binding protein.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.640
rplC	CMS1970	CMS0283	CMS1970	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Putative ABC transporter ATP binding protein.	0.673
rplC	rplD	CMS0283	CMS0284	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplT	CMS0283	CMS1223	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
rplC	rplU	CMS0283	CMS1816	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.995
rplC	rpmD	CMS0283	CMS0300	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L30.	0.998
rplC	rpmH	CMS0283	CMS3115	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.959
rplC	rpsC	CMS0283	CMS0289	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsE	CMS0283	CMS0299	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.998
rplC	rpsI	CMS0283	CMS0321	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
rplC	rpsO	CMS0283	CMS1185	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.990

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