STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS1973Putative dioxygenase ferredoxin subunit. (106 aa)    
Predicted Functional Partners:
fprA
NADPH-ferredoxin reductase.
     
 0.903
CMS1971
Conserved hypothetical protein.
 
     0.840
CMS1974
Conserved hypothetical protein.
       0.832
CMS1975
Conserved hypothetical protein.
       0.832
CMS1972
Putative ABC transporter ATP-binding subunit.
       0.816
CMS0066
Putative secreted oxidase.
  
 
 0.795
CMS1976
Putative cytochrome oxidase assembly protein.
 
    0.606
CMS1711
Putative pyridine nucleotide-disulphide oxidoreductase (putative NADH oxidase).
  
 
 0.589
CMS1970
Putative ABC transporter ATP binding protein.
       0.450
CMS2006
Putative glutamate synthase alpha subunit.
  
  
 0.403
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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