Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CMS0684 | hrdD | CMS0684 | CMS2577 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.738 |
| CMS0684 | rbpA | CMS0684 | CMS1680 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.944 |
| CMS0684 | rpoA | CMS0684 | CMS0316 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS0684 | rpoB | CMS0684 | CMS0269 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS0684 | rpoC | CMS0684 | CMS0270 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS0684 | rpoZ | CMS0684 | CMS2026 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.944 |
| CMS0684 | sigA | CMS0684 | CMS1629 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | Putative RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.738 |
| gmk | rpoB | CMS2027 | CMS0269 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.452 |
| gmk | rpoZ | CMS2027 | CMS2026 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.979 |
| greA | rpoA | CMS2432 | CMS0316 | Putative transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.972 |
| greA | rpoB | CMS2432 | CMS0269 | Putative transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.990 |
| greA | rpoC | CMS2432 | CMS0270 | Putative transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
| greA | rpoZ | CMS2432 | CMS2026 | Putative transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.960 |
| hrdD | CMS0684 | CMS2577 | CMS0684 | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | 0.738 |
| hrdD | rbpA | CMS2577 | CMS1680 | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.999 |
| hrdD | rpoA | CMS2577 | CMS0316 | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| hrdD | rpoB | CMS2577 | CMS0269 | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| hrdD | rpoC | CMS2577 | CMS0270 | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| hrdD | rpoZ | CMS2577 | CMS2026 | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
| rbpA | CMS0684 | CMS1680 | CMS0684 | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | 0.944 |
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