STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2105Putative integral membrane transport protein. (523 aa)    
Predicted Functional Partners:
CMS2106
Putative ABC transporter, ATP-binding protein; Match is to the C terminal portion. N-terminal half has no significant database matches.
 
  
 0.952
CMS2104
Conserved hypothetical protein.
       0.690
CMS0184
Putative membrane protein.
  
     0.617
CMS2795
Conserved hypothetical protein.
  
     0.591
CMS2198
Putative membrane protein.
  
     0.567
CMS2090
Putative membrane protein.
  
     0.499
CMS2200
Putative large exported protein.
  
     0.452
CMS0111
Putative membrane protein.
  
     0.441
CMS2214
Putative integral membrane protein.
  
     0.441
CMS2113
Putative membrane protein; Probably involved in polysaccharide biosynthesis.
  
     0.433
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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