STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2116Putative glycosyl transferase. (334 aa)    
Predicted Functional Partners:
CMS2114
Putative glycosyl transferase.
 
   
 0.954
CMS2115
Putative transferase.
 
     0.953
CMS2113
Putative membrane protein; Probably involved in polysaccharide biosynthesis.
 
    0.803
CMS1243
Conserved hypothetical protein.
 
 
 0.732
CMS1469
Putative deacetylase.
  
  
 0.552
CMS0418
Conserved hypothetical protein.
  
 
 0.519
CMS0642A
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to upstream CDS.
 
   
 0.518
CMS1673
Putative exported ATP-binding protein.
  
     0.499
CMS0616
Putative integral membrane protein.
  
     0.443
CMS2117
Putative protease.
       0.435
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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