Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ptpALow molecular weight protein-tyrosine-phosphatase. (239 aa)    
Predicted Functional Partners:
ptpA-2
Low molecular weight protein-tyrosine-phosphatase.
  
  
  0.941
CMS2256
Putative polysaccharide biosynthesis protein.
 
 
 0.933
CMS0167
Putative Wzz-related membrane protein.
 
 
 0.737
CMS2399
Putative surface polysaccharide biosynthesis protein.
 
 
 0.657
CMS2258
Putative initial glycosyl transferase.
 
  
 0.642
CMS2255
Putative acyltransferase.
       0.466
CMS1590
Putative initial glycosyl transferase; Responsible for linkage of the initial sugar to the lipid carrier in surface polysaccharide biosynthesis.
 
  
 0.459
CMS0784
Putative thioredoxin.
  
 
 0.456
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.456
CMS2262
Putative transferase.
       0.450
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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