STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2350Conserved hypothetical protein. (269 aa)    
Predicted Functional Partners:
CMS2348
Conserved hypothetical protein.
 
    0.921
CMS1943
Conserved hypothetical protein.
  
  
 
0.907
gudD
Putative glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.868
CMS2349
Putative IclR-family transcriptional regulator.
 
    0.854
peh
Endo-polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
   
 
  0.804
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
CMS2355
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
     0.748
CMS2351
Putative substrate-binding lipoprotein.
 
     0.635
CMS2352
Putative inregral membrane transport.
       0.541
CMS2353
Putative integral membrane transport protein.
       0.541
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.