STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2394Putative DNA-binding membrane protein. (167 aa)    
Predicted Functional Partners:
CMS1290
Putative two-component system response regulator (pseudogene); HMMPfam hit to PF00072, Response regulator receiver, score 8.1e-35.
  
     0.688
CMS2039
Putative sortase-sorted surface protein.
  
     0.538
apt-2
Adenine phosphoribosyltransferase.
       0.527
CMS2393
Putative ATP-binding protein.
  
    0.506
NCU06945.1
Conserved hypothetical protein.
  
     0.497
CMS0851
Putative integral membrane protein.
  
    0.418
CMS2285
Putative beta-lactamase.
  
     0.406
CMS2396
Putative MerR-family transcriptional regulator.
       0.401
CMS2397
Conserved hypothetical protein.
       0.401
CMS2398
Conserved hypothetical protein.
       0.401
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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