STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2443Putative anti-sigma factor. (144 aa)    
Predicted Functional Partners:
CMS2444
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.965
CMS2446
Conserved hypothetical protein.
  
 
 0.907
CMS2705
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.855
CMS2445
Putative polysaccharide synthase.
  
    0.796
CMS2442
Putative membrane protein; Multi-domain protein with no full length matches; Belongs to the glycosyl hydrolase 26 family.
       0.784
CMS0403
Putative sigma factor; Belongs to the sigma-70 factor family.
  
 
 0.778
CMS2702
Twin domain hypothetical protein; C-terminal domain similar to upstream CDS.
  
 
 0.693
CMS0224
Putative two-component system phosphotransfer protein.
  
  
 0.621
CMS2703
Twin domain membrane protein; C-terminal domain similar to downstream CDS.
  
 
 0.599
CMS0676
Putative secreted protein.
   
    0.551
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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