STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2443Putative anti-sigma factor. (144 aa)    
Predicted Functional Partners:
CMS2444
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.959
CMS2446
Conserved hypothetical protein.
  
 
 0.903
CMS2705
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.828
CMS2445
Putative polysaccharide synthase.
  
    0.803
CMS2442
Putative membrane protein; Multi-domain protein with no full length matches; Belongs to the glycosyl hydrolase 26 family.
       0.784
CMS2702
Twin domain hypothetical protein; C-terminal domain similar to upstream CDS.
  
 
 0.675
CMS0403
Putative sigma factor; Belongs to the sigma-70 factor family.
  
 
 0.674
CMS2703
Twin domain membrane protein; C-terminal domain similar to downstream CDS.
  
 
 0.580
CMS0224
Putative two-component system phosphotransfer protein.
  
  
 0.579
CMS0676
Putative secreted protein.
   
    0.543
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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