STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2501Conserved hypothetical protein. (155 aa)    
Predicted Functional Partners:
CMS2824
Putative sugar hydrolase; Belongs to the glycosyl hydrolase 32 family.
  
     0.600
CMS2502
Putative membrane protein.
       0.576
lvr
Levodione reductase ((6r)-2,2,6-trimethyl-1,4-cyclohexanedione reductase).
       0.520
CMS2500
Putative integral membrane protein.
       0.520
CMS2823
Sugar hydrolase; Belongs to the glycosyl hydrolase 68 family.
  
     0.493
CMS0939
Putative levanase; Belongs to the glycosyl hydrolase 32 family.
  
     0.486
CMS2948
Putative secondary metabolism monooxygenase.
  
     0.473
CMS0391
Putative dehydrogenase.
  
     0.422
CMS2503
Putative membrane protein.
       0.409
CMS2504
Putative membrane protein.
       0.409
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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