STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CMS2518Conserved hypothetical protein. (231 aa)    
Predicted Functional Partners:
CMS2517
Conserved hypothetical protein.
     0.994
CMS2516
Putative glycosyl transferase.
 
     0.951
CMS2520
Putative integral membrane protein.
 
     0.801
CMS2497
Putative epimerase/dehydratase.
 
     0.799
CMS2514
Putative membrane-bound oxidoreductase (pseudogene); HMMPfam hit to PF00174, Oxidoreductase,molybdopterin binding, score 1.1e-12.
 
     0.763
CMS2521
Putative integral membrane protein.
 
     0.723
CMS2515
Putative two-component system response regulator.
 
     0.531
CMS0390
Putative TetR family transcriptional regulator.
  
     0.527
CMS0261
Putative sortase-sorted surface protein (pseudogene); PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
  
     0.499
CMS1433
Putative TetR-family transcriptional regulator.
  
     0.482
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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