STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2534Putative oxidoreductase. (677 aa)    
Predicted Functional Partners:
CMS2533
Putative LacI-family transcriptional regulator.
 
     0.782
CMS2632
Hypothetical protein.
 
  
 0.760
CMS0841
Putative oxidoreductase.
  
    0.660
CMS2535
Hypothetical fusion protein; GC Frameplot suggests recent fusion of 2 CDSs.
  
    0.556
CMS2531
Putative integral membrane protein.
 
     0.553
CMS2631
Putative oxidoreductase (pseudogene); HMMPfam hit to PF01408, Oxidoreductase, N-terminal,score 2.1e-21.
 
    0.531
CMS2894
Hypothetical protein.
  
     0.504
CMS0840
Conserved hypothetical protein.
 
    0.480
CMS2818
Putative bifunctional dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.445
CMS2532
Putative GntR-family transcriptional regulator.
       0.440
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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