Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CMS0684 | hrdD | CMS0684 | CMS2577 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.738 |
| CMS0684 | rbpA | CMS0684 | CMS1680 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.944 |
| CMS0684 | rpoA | CMS0684 | CMS0316 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS0684 | rpoB | CMS0684 | CMS0269 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS0684 | rpoC | CMS0684 | CMS0270 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS0684 | rpoZ | CMS0684 | CMS2026 | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.944 |
| CMS2744 | hrdD | CMS2744 | CMS2577 | Putative transcription factor regulator. | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.738 |
| CMS2744 | rbpA | CMS2744 | CMS1680 | Putative transcription factor regulator. | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.944 |
| CMS2744 | rpoA | CMS2744 | CMS0316 | Putative transcription factor regulator. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS2744 | rpoB | CMS2744 | CMS0269 | Putative transcription factor regulator. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS2744 | rpoC | CMS2744 | CMS0270 | Putative transcription factor regulator. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CMS2744 | rpoZ | CMS2744 | CMS2026 | Putative transcription factor regulator. | Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.942 |
| dnaG | hrdD | CMS1557 | CMS2577 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.858 |
| dnaG | rpoA | CMS1557 | CMS0316 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.519 |
| dnaG | rpoB | CMS1557 | CMS0269 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.726 |
| dnaG | rpoC | CMS1557 | CMS0270 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.801 |
| frr | hrdD | CMS0774 | CMS2577 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.680 |
| frr | rpoA | CMS0774 | CMS0316 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.672 |
| frr | rpoB | CMS0774 | CMS0269 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.767 |
| hrdD | CMS0684 | CMS2577 | CMS0684 | RNA polymerase principal sigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein; Contains an N-terminal domain in common with CarD from Myxococcus xanthus Q50887 but does not include the C-terminal DNA-binding domain so is unlikely to carry out the equivalent regulation role. | 0.738 |
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