STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2659Putative glycosyl transferase. (367 aa)    
Predicted Functional Partners:
CMS2658
Putative glycosyl transferase.
 
  
 0.956
CMS2661
Putative bifunctional kinase/glycosyl transferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
   
 0.951
CMS2660
Putative glycosyl transferase/isomerase.
 
   
 0.948
CMS2662
Putative short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.893
CMS2646
Putative glycosyltransferase.
    0.842
CMS2670
Putative glycosyl transferase.
 
    0.775
CMS2294
Conserved hypothetical protein.
 
     0.747
CMS2680
Putative sugar synthase (pseudogene); HMMPfam hit to PF00294, Carbohydrate kinase, PfkB,score 5.2e-21.
  
     0.685
CMS2656
Hypothetical protein.
       0.480
CMS2657
Hypothetical protein.
       0.480
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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