STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2690Putative exported peptidase. (393 aa)    
Predicted Functional Partners:
CMS2692
Conserved hypothetical protein (ATP-binding).
 
 
   0.876
CMS2691
Putative exported protein.
       0.780
CMS0071
Putative peptidase.
  
   
 0.697
CMS3001
Putative peptidase.
  
   
 0.650
CMS2689
Putative DNA-binding protein.
       0.642
CMS2696
Putative integral membrane protein.
 
  
 0.642
CMS2699
Conjugal transfer protein.
 
     0.631
CMS0572
Hypothetical protein; Contains Pfam match to PF01551;Peptidase.
  
   
 0.611
CMS2697
Putative exported protein.
 
     0.581
CMS2698
Putative ATP-binding protein.
 
     0.543
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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