Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CMS2704Putative regulator. (140 aa)    
Predicted Functional Partners:
CMS2705
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.965
CMS2703
Twin domain membrane protein; C-terminal domain similar to downstream CDS.
  
 
 0.905
CMS2444
Putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.855
CMS2702
Twin domain hypothetical protein; C-terminal domain similar to upstream CDS.
  
 
 0.831
CMS0403
Putative sigma factor; Belongs to the sigma-70 factor family.
  
 
 0.778
CMS0224
Putative two-component system phosphotransfer protein.
  
  
 0.621
CMS2446
Conserved hypothetical protein.
  
 
 0.610
CMS0676
Putative secreted protein.
   
    0.551
CMS2706
Hypothetical protein.
       0.439
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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