STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS2887Putative sortase-sorted surface-anchored protein. (553 aa)    
Predicted Functional Partners:
CMS2799
Putative exported protein.
  
     0.707
CMS2495
Conserved hypothetical protein.
  
     0.704
CMS2323
Putative membrane protein.
  
     0.703
CMS0790
Putative glycosyl transferase.
  
     0.677
CMS0264
Putative phospholipase C.
  
     0.641
CMS0261
Putative sortase-sorted surface protein (pseudogene); PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
  
     0.616
CMS1334
Putative monophosphatase/phosphodiesterase bifunctional enzyme.
  
     0.598
CMS1338
Putative substrate-binding transport protein.
  
     0.579
CMS2508
Putative monooxygenase.
  
     0.561
CMS0796
Putative TetR-family transcriptional regulator.
  
     0.534
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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