STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS3009Putative type IV leader peptidase. (208 aa)    
Predicted Functional Partners:
smf
Putative DNA-binding/uptake protein.
  
  
 0.721
CMS3008
Putative MarR-family transcriptional regulator.
       0.678
CMS1758
Putative DNA uptake protein (pseudogene); F - pseudo in Lxx.
   
  
 0.644
fprA
NADPH-ferredoxin reductase.
   
 
 0.537
CMS2093
HMMPfam hit to PF00482, Bacterial type II secretion system protein, score 2e-12.
 
   
 0.466
CMS2798
Putative exported protein.
  
     0.433
CMS0676
Putative secreted protein.
 
     0.429
CMS0782
Putative low complexity hydrophilic protein; Contains extensive coiled-coil regions.
 
   
 0.429
CMS0732
Shikimate 5-dehydrogenase.
  
  
 0.400
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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