STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS3040Putative sugar-binding transport lipoprotein. (439 aa)    
Predicted Functional Partners:
CMS3038
Putative sugar transport integral membrane protein.
 
 0.985
CMS3039
Putative sugar transport integral membrane protein.
 
  0.985
CMS0921
Putative integral membrane transport protein.
 
  0.940
CMS0920
Putative extracellular solute-binding transport protein.
  
  
 
0.925
CMS0922
Putative integral membrane transport protein.
 
 0.909
CMS2749
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.902
CMS3037
Putative LacI-family transcriptional regulator.
 
     0.592
CMS0869
Putative integral membrane transport protein.
  
 
 0.576
CMS3041
Putative oxidoreductase.
       0.517
CMS2672
Putative integral membrane transport protein.
 
   0.490
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.