Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
KZC96513.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
KZC96492.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.695
KZC96126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.631
KZC96514.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.575
KZC96511.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
KZC96512.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
KZC95324.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.510
rsmH
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.483
KZC93883.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.474
KZC96021.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.474
KZC96510.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
Your Current Organism:
Clavibacter michiganensis tessellarius
NCBI taxonomy Id: 31965
Other names: ATCC 33566, C. michiganensis subsp. tessellarius, CCUG 38896, CIP 105364, Clavibacter michiganense subsp. tessellarius, Clavibacter michiganense tessellarius, Clavibacter michiganensis subsp. tessellarius, Clavibacter tessellarius nom. illegit., Corynebacterium michiganense subsp. tessellarius, Corynebacterium michigense tessellarius, DSM 20741, ICMP 7221, JCM 9668, LMG 7294, LMG:7294, NCPPB 3664, PDDCC 7221, PDDCC:7221, strain 78181
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