STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWH51_09710ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
KZC95468.1
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.917
KZC94946.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.917
KZC95722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.730
KZC95723.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.604
KZC95051.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.524
KZC95052.1
Biopolymer transporter Tol; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
KZC93826.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
  
    0.477
KZC94960.1
UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.414
KZC94659.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.412
KZC96188.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.401
Your Current Organism:
Clavibacter michiganensis tessellarius
NCBI taxonomy Id: 31965
Other names: ATCC 33566, C. michiganensis subsp. tessellarius, CCUG 38896, CIP 105364, Clavibacter michiganense subsp. tessellarius, Clavibacter michiganense tessellarius, Clavibacter michiganensis subsp. tessellarius, Clavibacter tessellarius nom. illegit., Corynebacterium michiganense subsp. tessellarius, Corynebacterium michigense tessellarius, DSM 20741, ICMP 7221, JCM 9668, LMG 7294, LMG:7294, NCPPB 3664, PDDCC 7221, PDDCC:7221, strain 78181
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