STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN65238.1CDP-glycerol poly(glycerophosphate) glycerophosphotransferase. (1668 aa)    
Predicted Functional Partners:
KRN65239.1
ABC-type polysaccharide polyol phosphate export system, permease component.
 
  
 0.895
tagH
tagH protein; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system.
 
 
 0.885
ligA
ligA protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
  
    0.579
KRN67150.1
Hypothetical protein.
  
     0.551
KRN65236.1
Exonuclease III.
       0.525
KRN67559.1
Teichoic acid biosynthesis protein.
 
 
0.519
KRN66953.1
Lysozyme domain-containing protein.
  
     0.502
KRN66059.1
Hypothetical protein.
 
 
0.499
KRN66103.1
Glycerol-3-phosphate cytidylyltransferase.
 
  
 0.499
KRN66795.1
tarL protein.
 
 
0.496
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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