STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN67248.1PTS system IIB component (galactitol fructose specific). (101 aa)    
Predicted Functional Partners:
KRN67247.1
PTS system iia component.
 
 
 0.989
KRN67249.1
PTS system, galactitol-specific IIC component.
 
 
 0.982
KRN66108.1
ptsH protein.
    
  0.919
KRN67173.1
Hypothetical protein.
  
 
 0.903
KRN65029.1
Galactitol pts, eiic.
 
 
 0.878
KRN67171.1
PTS system galactitol-specific transsporter subunit IIC.
  
 
 0.852
KRN65534.1
licABCH operon regulator.
  
 
 0.784
KRN67245.1
Galactose-6-phosphate isomerase LacA subunit.
 
     0.766
KRN67244.1
Galactose-6-phosphate isomerase.
 
     0.765
KRN67254.1
Phosphotransferase system fructose-specific component IIB.
 
 
 0.741
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.