STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN66917.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
KRN67584.1
Pyk protein; Belongs to the pyruvate kinase family.
  
 
  0.866
KRN67681.1
Serine threonine specific protein phosphatase.
  
 0.848
KRN66905.1
Transposase.
  
 0.848
KRN65305.1
fruA protein.
  
   0.696
KRN67254.1
Phosphotransferase system fructose-specific component IIB.
  
   0.696
KRN66054.1
Capsular polysaccharide biosynthesis protein.
    
 
 0.681
KRN66052.1
Capsular polysaccharide biosynthesis protein.
    
 
 0.643
KRN66053.1
Tyrosine-protein kinase.
    
 
 0.639
KRN65016.1
Hypothetical protein.
  
 
 0.615
KRN67551.1
Hypothetical protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
 0.529
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.