STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN66931.1Hypothetical protein. (3535 aa)    
Predicted Functional Partners:
KRN67627.1
Hypothetical protein.
  
 0.893
KRN65212.1
Cell-envelope associated proteinase.
  
 0.882
KRN67366.1
Hypothetical protein.
  
 0.882
KRN67611.1
Carboxy-terminal processing proteinase; Belongs to the peptidase S41A family.
  
 0.875
KRN66284.1
Hypothetical protein.
 
  0.848
KRN66918.1
Hypothetical protein.
 
  0.846
KRN67608.1
Hypothetical protein.
  
  0.826
KRN66167.1
Hypothetical protein.
  
  0.826
KRN67388.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
 0.814
KRN66753.1
ComX; Belongs to the sigma-70 factor family.
   
 0.814
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.