Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRN66936.1D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (431 aa)    
Predicted Functional Partners:
KRN65331.1
Penicillin binding protein 2B.
 
 
 0.975
KRN67723.1
Cell division protein FtsI penicillin-binding protein 2.
  
 
 0.974
KRN67774.1
Hypothetical protein.
 
 
 0.966
KRN67643.1
Hypothetical protein.
  
 
 0.961
KRN66781.1
Hypothetical protein; Belongs to the peptidase S11 family.
 
  
0.929
KRN66935.1
Sortase related acyltransferase.
    
  0.844
KRN66624.1
Beta-lactamase family protein.
     
 0.816
KRN66727.1
Esterase.
     
 0.816
KRN67554.1
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.725
KRN67611.1
Carboxy-terminal processing proteinase; Belongs to the peptidase S41A family.
  
 0.659
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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