STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN66938.1Two-component system, OmpR family, phosphate regulon response regulator OmpR. (229 aa)    
Predicted Functional Partners:
KRN66937.1
Signal transduction histidine kinase.
 
 0.989
KRN64325.1
Histidine protein kinase sensor protein.
 
 0.984
KRN66712.1
Signal transduction histidine kinase.
 
 0.964
KRN67059.1
Hypothetical protein.
 
 0.959
KRN66635.1
Two-component system, sensor histidine kinase.
 
 0.891
KRN67735.1
Signal transduction histidine kinase.
 
 0.883
KRN66202.1
Histidine protein kinase plnb.
  
 0.822
KRN67394.1
Hypothetical protein.
  
 0.752
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.668
KRN67736.1
DNA-binding response regulator.
  
  
0.658
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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