STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN66945.1Hypothetical protein. (334 aa)    
Predicted Functional Partners:
KRN66944.1
Hypothetical protein.
 
     0.818
KRN65539.1
Mannose-6-phosphate isomerase.
     
 0.638
KRN66922.1
Hypothetical protein.
    
  0.635
KRN66931.1
Hypothetical protein.
  
 
 0.613
KRN66223.1
Hypothetical protein.
  
 
 0.613
KRN65017.1
Hypothetical protein.
     
  0.564
KRN67252.1
alpha-L-rhamnosidase.
     
  0.564
KRN66275.1
Hypothetical protein.
    
 0.564
KRN65602.1
RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
 0.538
KRN67619.1
Hypothetical protein.
    
  0.513
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.