STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN66952.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
KRN66953.1
Lysozyme domain-containing protein.
 
    0.923
KRN65243.1
Extracellular protein.
  
     0.771
KRN67333.1
Hypothetical protein.
  
     0.737
KRN65593.1
Hypothetical protein.
  
     0.729
KRN65152.1
Hypothetical protein.
  
     0.715
KRN67491.1
Hypothetical protein.
  
     0.685
KRN67037.1
Hypothetical protein.
  
     0.672
KRN66923.1
Extracellular protein.
  
     0.652
KRN64967.1
Endoglucanase Y; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
  
     0.640
KRN66800.1
Hypothetical protein.
  
     0.612
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.