STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN66962.1ABC transporter, permease protein. (539 aa)    
Predicted Functional Partners:
KRN66961.1
ABC transporter ATP-binding protein.
 
 
 0.992
KRN66963.1
Hypothetical protein.
 
     0.925
KRN67221.1
Abc transporteratp-binding protein.
 
 
 0.736
KRN67002.1
ABC transporter, ATP-binding protein.
 
 
 0.731
KRN67386.1
ABC-type metal ion transport system, ATPase component.
  
 
 0.696
KRN67043.1
ABC transporter ATP-binding protein.
  
 
 0.696
KRN67517.1
Multidrug ABC superfamily ATP binding cassette transporter, ABC protein.
  
 
 0.694
KRN67766.1
Abc superfamily atp binding cassette transporter, abc protein.
  
 
 0.694
KRN66184.1
ABC superfamily ATP binding cassette transporter, ABC protein.
  
 
 0.694
KRN66212.1
ABC transporter ATPase.
  
 
 0.694
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.