STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN66963.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
KRN66962.1
ABC transporter, permease protein.
 
     0.925
KRN66961.1
ABC transporter ATP-binding protein.
 
   
 0.908
KRN65464.1
Hypothetical protein.
  
     0.561
KRN67319.1
Hypothetical protein.
  
     0.545
KRN67402.1
Cell surface protein.
  
 
 
 0.528
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.479
KRN66916.1
Hypothetical protein.
  
     0.474
KRN66960.1
Hypothetical protein.
       0.453
KRN66964.1
Hypothetical protein.
     
 0.417
KRN67300.1
Hypothetical protein.
 
  
 0.416
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.