Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KRN66966.1Permease domain-containing protein. (859 aa)    
Predicted Functional Partners:
KRN66967.1
ABC transporter ATP-binding protein.
 
 0.999
KRN67165.1
ABC transporter related protein.
  
 0.998
KRN65225.1
ABC transporter, ATP-binding protein.
  
 0.993
KRN64323.1
ABC transporter, ATP-binding protein.
  
 0.993
KRN66597.1
Hypothetical protein.
  
 0.993
KRN64325.1
Histidine protein kinase sensor protein.
   
 0.943
KRN66202.1
Histidine protein kinase plnb.
   
 0.943
KRN66596.1
ABC superfamily ATP binding cassette transporter, permease protein.
 
 
 0.927
KRN66965.1
Hypothetical protein.
  
  
 0.753
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.730
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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