STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN66967.1ABC transporter ATP-binding protein. (233 aa)    
Predicted Functional Partners:
KRN66966.1
Permease domain-containing protein.
 
 0.999
KRN64322.1
Peptide ABC transporter permease.
 
 0.912
KRN67165.1
ABC transporter related protein.
 
0.904
KRN67485.1
Hypothetical protein.
 
 0.766
KRN66965.1
Hypothetical protein.
   
 
 0.747
KRN65304.1
Extracellular protein, gamma-D-glutamate-meso-diaminopimelate muropeptidase.
  
 
 0.623
KRN66596.1
ABC superfamily ATP binding cassette transporter, permease protein.
  
 
 0.602
KRN67043.1
ABC transporter ATP-binding protein.
 
0.558
KRN65586.1
Zinc iron ABC transporter, ATP-binding protein.
 
0.533
KRN65137.1
Glutamine ABC transporter membrane protein.
 
 
 
 0.523
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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