STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN66969.1Hypothetical protein. (395 aa)    
Predicted Functional Partners:
KRN66970.1
C-di-GMP-specific phosphodiesterase.
 
 
 0.931
KRN67072.1
C-di-GMP-specific phosphodiesterase.
 
 
 0.891
KRN66972.1
C-di-GMP-specific phosphodiesterase.
 
 
 0.875
KRN67665.1
C-di-GMP-specific phosphodiesterase.
 
 
 0.862
KRN66877.1
Diguanylate cyclase phosphodiesterase domain 2 containing protein.
 
 
 0.819
KRN66880.1
Glycosyltransferase.
 
 
 0.642
folE
GTP cyclohydrolase I.
    
  0.535
KRN67551.1
Hypothetical protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
     
 0.530
KRN66058.1
Glycosyltransferase.
  
 
 0.526
KRN67713.1
Glutamine synthetase repressor.
    
 0.461
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.