STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN66972.1C-di-GMP-specific phosphodiesterase. (239 aa)    
Predicted Functional Partners:
KRN66971.1
ABC superfamily ATP binding cassette transporter, binding protein.
 
 
 0.909
KRN67024.1
Signal transduction diguanylate cyclase.
 
 
 0.893
KRN66969.1
Hypothetical protein.
 
 
 0.878
KRN66880.1
Glycosyltransferase.
 
 
 0.635
KRN66876.1
Hypothetical protein.
 
    0.558
KRN66058.1
Glycosyltransferase.
  
 
 0.514
KRN66875.1
Glycosyltransferase.
 
    0.482
KRN66108.1
ptsH protein.
     
 0.469
KRN64325.1
Histidine protein kinase sensor protein.
  
 
 0.461
KRN66202.1
Histidine protein kinase plnb.
  
 
 0.461
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.