STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN66978.1Amidohydrolase. (396 aa)    
Predicted Functional Partners:
KRN66979.1
Hypothetical protein.
 
     0.874
KRN66977.1
Amidohydrolase.
 
    
0.770
KRN65838.1
Cytosine deaminase.
  
 
 0.630
KRN66976.1
Hypothetical protein.
       0.526
KRN65039.1
Hypothetical protein.
  
 
 0.455
KRN65042.1
GntR family transcriptional regulator.
  
 
 0.455
KRN65043.1
GntR family transcriptional regulator.
  
 
 0.455
KRN67175.1
GntR family transcriptional regulator.
  
 
 0.455
KRN67321.1
GntR family transcriptional regulator.
  
 
 0.455
KRN66661.1
Transcriptional regulator.
  
 
 0.455
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.