STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN66994.1Hypothetical protein; Belongs to the LysR transcriptional regulatory family. (289 aa)    
Predicted Functional Partners:
KRN66993.1
Hypothetical protein.
 
    0.867
KRN66988.1
phosphoribosyl-dephospho-CoA transferase.
 
     0.852
KRN66989.1
Malonate decarboxylase, beta subunit.
 
    0.850
KRN66990.1
Malonate decarboxylase delta subunit.
 
     0.839
KRN66992.1
Malonate decarboxylase, alpha subunit.
 
     0.836
KRN66991.1
triphosphoribosyl-dephospho-CoA synthase MdcB.
 
     0.703
KRN66995.1
Hypothetical protein.
 
     0.675
KRN65910.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.648
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.642
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.619
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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