STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN66995.1Hypothetical protein. (341 aa)    
Predicted Functional Partners:
KRN66994.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
 
     0.675
KRN66989.1
Malonate decarboxylase, beta subunit.
 
     0.591
KRN66988.1
phosphoribosyl-dephospho-CoA transferase.
 
     0.584
KRN65466.1
Hypothetical protein.
 
     0.571
KRN66993.1
Hypothetical protein.
 
     0.569
KRN65579.1
Membrane-bound protease, caax family.
 
     0.560
KRN66990.1
Malonate decarboxylase delta subunit.
 
     0.556
KRN66992.1
Malonate decarboxylase, alpha subunit.
 
     0.525
KRN66991.1
triphosphoribosyl-dephospho-CoA synthase MdcB.
 
     0.453
KRN67046.1
Cell surface hydrolase.
  
     0.427
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.