STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN67006.1Transcriptional regulator. (212 aa)    
Predicted Functional Partners:
KRN67364.1
Hypothetical protein.
  
     0.765
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.681
KRN65908.1
Hypothetical protein; Belongs to the CinA family.
    
 0.681
KRN67394.1
Hypothetical protein.
   
 0.548
KRN64330.1
Tagatose 1,6-diphosphate aldolase.
    
  0.469
lacD
Tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
    
  0.469
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.449
KRN67501.1
Fumarate reductase (flavoprotein).
  
 
 0.440
metK
metK protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.439
KRN65396.1
Alr protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.438
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.