STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN65403.1Hypothetical protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (138 aa)    
Predicted Functional Partners:
udk
Uridine kinase.
  
  0.694
KRN65110.1
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.648
KRN67297.1
trxA protein; Belongs to the thioredoxin family.
  
 
 0.648
KRN66796.1
astA protein.
  
 
 0.648
KRN66190.1
Thiol-disulfide isomerase and thioredoxin.
  
 
 0.648
KRN66053.1
Tyrosine-protein kinase.
  
 0.639
KRN66931.1
Hypothetical protein.
    
 
 0.615
KRN66223.1
Hypothetical protein.
    
 
 0.615
KRN66071.1
Dtdp-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
    
 0.607
KRN67353.1
Hypothetical protein; Belongs to the UPF0761 family.
  
  
 0.605
Your Current Organism:
Pediococcus cellicola
NCBI taxonomy Id: 319652
Other names: AS 1.3787, DSM 17757, JCM 14152, LMG 22956, LMG:22956, P. cellicola, Pediococcus cellicola Zhang et al. 2005, Pediococcus sp. Z-1, Pediococcus sp. Z-8, strain Z-8
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