STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER04179.1Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (446 aa)    
Predicted Functional Partners:
SER83824.1
Glycosyl hydrolase family 53.
 
 
 0.891
SER03741.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
 0.796
SER04131.1
octanoyl-[GcvH]:protein N-octanoyltransferase.
       0.784
SER04246.1
PTS system, mannose-specific IIC component.
 
     0.745
SER04212.1
PTS system, mannose-specific IIB component.
       0.732
SER04288.1
PTS system, mannose-specific IID component.
       0.707
SER04099.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
   
 0.685
SER03669.1
AraC-type DNA-binding protein.
 
  
 0.676
SER08348.1
Acetyl esterase/lipase.
 
  
 0.668
SER04329.1
PTS system, mannose-specific IIA component.
       0.666
Your Current Organism:
Pediococcus ethanolidurans
NCBI taxonomy Id: 319653
Other names: AS 1.3889, DSM 22301, LMG 23354, LMG:23354, P. ethanolidurans, Pediococcus ethanolidurans Liu et al. 2006, Pediococcus sp. Z-9, strain Z-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.